Structure of PDB 6ij2 Chain D

Receptor sequence
>6ij2D (length=236) Species: 345073 (Vibrio cholerae O395) [Search protein sequence]
LDFDFTMAFQPIVNCRTKEIFGYEALVRGLNNESAYSVISRVNEDNRYLF
DQMCRVKAIALAAKLGLTSKLSINFLPNAIYVPERCIRTTLEAAKRYQFP
IENIMFEFTEAERVEDVNHIKRIVEYYKSLGFQTAIDDFGSGYSGLNLLA
DFQTNIVKVDMGLIRNIHADQVRQSIMKNCLKLFSDLNIQPLAEGVESHA
EFAWLKAAGVELMQGYYFAKPGFESLPSVNPEFSEA
3D structure
PDB6ij2 Structures of c-di-GMP/cGAMP degrading phosphodiesterase VcEAL: identification of a novel conformational switch and its implication.
ChainD
Resolution1.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D Q31 L47 V48 R49 I60 N95 L97 D158 M182 G216 E218 G236 Y237 Q10 L26 V27 R28 I39 N74 L76 D137 M161 G195 E197 G215 Y216
BS02 CA D D158 D159 E215 D137 D138 E194
BS03 CA D E45 N95 E128 D158 E24 N74 E107 D137
BS04 CA D D159 S162 Y164 D138 S141 Y143
BS05 CA D T130 D158 D159 T109 D137 D138
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6ij2, PDBe:6ij2, PDBj:6ij2
PDBsum6ij2
PubMed31647518
UniProtA0A0H3AJ04

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