Structure of PDB 6gn6 Chain D

Receptor sequence
>6gn6D (length=425) Species: 49283 (Paenibacillus thiaminolyticus) [Search protein sequence]
HMTLTAREQRIQWFNHDRFGMFIHWGLYAIPARGEWVRSFERIPVEDYEK
YFNSFNPVNYDPKAWAKAAKAAGMKYAVMTTKHHDGFCLFDSALTDYKAT
NTPAGRDLIREYADAFRAEGLKVGFYYSIIDWHHPDYPAYGDRQHPMRDN
AEFKDRPQDFNRYLDYMHGQVKELLTNYGTIDVLWFDFSYEDMTGEKWKA
TELVKMIRELQPNVLIDNRLGGNIKAREPEIYAGDFASPEQLLPPHGIVN
EDGKPLPWEACITLNHHWGYHAHDRDYKTPKQVVRGLVECVSKNGNMLLN
VGPNAKGEIPQLSLDVLGEVGAWMRANGDSIYGCGAAALSKPEWGRYTQK
GNKLYAHILDRGIGPIALQGLNGRVKEARLLADGAEVNIQTPWNAVDYPD
YLFVNIPTAQLPDDFNTVIELTLED
3D structure
PDB6gn6 Active site complementation and hexameric arrangement in the GH family 29; a structure-function study of alpha-l-fucosidase isoenzyme 1 from Paenibacillus thiaminolyticus.
ChainD
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.51: alpha-L-fucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLC D S53 N55 S54 N56
BS02 GLC D N55 V57 N56 V58
BS03 GLC D H23 E34 W35 H82 H83 D186 E239 W267 H24 E35 W36 H83 H84 D187 E240 W268
Gene Ontology
Molecular Function
GO:0004560 alpha-L-fucosidase activity
GO:0016787 hydrolase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006004 fucose metabolic process
GO:0016139 glycoside catabolic process
Cellular Component
GO:0005764 lysosome

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Cellular Component
External links
PDB RCSB:6gn6, PDBe:6gn6, PDBj:6gn6
PDBsum6gn6
PubMed30544181
UniProtE3PQQ9

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