Structure of PDB 6gd8 Chain D

Receptor sequence

>6gd8D (length=108) Species: 559292 (Saccharomyces cerevisiae S288C)

AEFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEG
YSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLI
TYLKKATE

3D structure

• PDB: 6gd8 Auto-regulated Protein Assembly on a Supramolecular Scaffold.
• Chain: D
• Resolution: 2.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	EVB	D	K4 K5 T8 K11 T12	K9 K10 T13 K16 T17
BS02	HEC	D	R13 C14 C17 H18 G29 P30 I35 Y48 T49 M64 Y67 L68 T78 K79 M80 L94	R18 C19 C22 H23 G34 P35 I40 Y53 T54 M69 Y72 L73 T83 K84 M85 L99

Gene Ontology

Molecular Function

• GO:0005515 protein binding
• GO:0009055 electron transfer activity
• GO:0020037 heme binding
• GO:0046872 metal ion binding
• GO:1901612 cardiolipin binding

Biological Process

• GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
• GO:0006123 mitochondrial electron transport, cytochrome c to oxygen

Cellular Component

• GO:0005739 mitochondrion
• GO:0005758 mitochondrial intermembrane space

External links

• PDB: RCSB:6gd8, PDBe:6gd8, PDBj:6gd8
• PDBsum: 6gd8
• PubMed: 30109907
• UniProt: P00044|CYC1_YEAST Cytochrome c isoform 1 (Gene Name=CYC1)