Structure of PDB 6f92 Chain D

Receptor sequence
>6f92D (length=760) Species: 818 (Bacteroides thetaiotaomicron) [Search protein sequence]
EKLTDYVNPFVGTDGYGNVYPGAQIPFGGIQISPDTDSRFYDAASGYKYN
HLTLMGFSLTHLSGTGIPDLGDFLFIPGTGEMKLEPGTHEDPDQGYRSRY
SHDKEWASPNYYAVELADYGVKAEMTSGVRSGMFRFTYPESDNAFIMIDM
NHTLWQSCEWSNLRMINDSTITGYKLVKGWGPERHVYFTATFSKKLTGLR
FVQDKKPVIYNTSRFRSSYEAWGKNLMACISFDTKAGEEVTVKTAISAVS
TDGARNNMKELDGLTFNELRAKGEALWEKELGKYTLTADRKTKETFYTSA
YHAALHPFIFQDSDGQFRGLDKNIEKAEGFTNYTVFSLWDTYRALHPWFN
LVQQEVNADIANSMLAHYDKSVEKMLPIWSFYGNETWCMIGYHAVSVLAD
MIVKEVKGFDYERAYEAMKTTAMNSNYDCLPEYREMGYVPFDKEAESVSK
TLEYAYDDYCIAQAAKKLGKEDDYHYFLNRALSYQTLIDPETKYMRGRDS
KGDWRTPFTPVAYQGPGSVHGWGDITEGFTMQYTWYVPQDVQGYINEAGK
ELFRKRLDELFTVELPDDIPGAHDIQGRIGAYWHGNEPCHHVAYLYNYLK
EPWKCQKWIRTIVDRFYGNTPDALSGNDDCGQMSAWYMFNCIGFYPVAPS
SNIYNIGSPCAEAITVRMSNGKNIEMTADNWSPKNLYVKELYVNGKKYDK
SYLTYDDIRDGVKLRFVMSGKPNYKRAVSDEAVPPSISLPEKTMKYKSSI
GFLEHHHHHH
3D structure
PDB6f92 Bacteroides thetaiotaomicron generates diverse alpha-mannosidase activities through subtle evolution of a distal substrate-binding motif.
ChainD
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA D N590 E591 D633 N586 E587 D629
BS02 MVL D T69 G70 W184 W343 D344 W383 C392 M393 E531 D633 T65 G66 W180 W339 D340 W379 C388 M389 E527 D629 PDBbind-CN: -logKd/Ki=6.40,Ki=0.4uM
Gene Ontology
Molecular Function
GO:0000224 peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006516 glycoprotein catabolic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6f92, PDBe:6f92, PDBj:6f92
PDBsum6f92
PubMed29717710
UniProtQ8A0Q6

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