Structure of PDB 6f8y Chain D

Receptor sequence
>6f8yD (length=340) Species: 272844 (Pyrococcus abyssi GE5) [Search protein sequence]
TIIINVRERIEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKR
IFEAKGRPADNPLIIHIASFEQLEVLAKEIPEEAEMLAKRFWPGPLTLVL
PKSEVVPRVITGGLDTVAVRMPAHEIALKLIELSERPIAAPSANISGKPS
PTSAHHVAEDFYGKIECIIDGGETRIGVESTVIDLTEWPPVLLRPGGLPL
EEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEGPRDKV
RRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALR
HMDRTGVDVILAEGVEEKGLGLAVMNRLRKASGYRIIKVH
3D structure
PDB6f8y Structure-function analysis of Sua5 protein reveals novel functional motifs required for the biosynthesis of the universal t6A tRNA modification.
ChainD
Resolution2.86 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.87: L-threonylcarbamoyladenylate synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 THR D T35 V36 G38 H67 R121 E180 S181 R195 T34 V35 G37 H66 R120 E179 S180 R194
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003725 double-stranded RNA binding
GO:0005524 ATP binding
GO:0016779 nucleotidyltransferase activity
GO:0061710 L-threonylcarbamoyladenylate synthase
Biological Process
GO:0002949 tRNA threonylcarbamoyladenosine modification
GO:0006450 regulation of translational fidelity
GO:0008033 tRNA processing
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:6f8y, PDBe:6f8y, PDBj:6f8y
PDBsum6f8y
PubMed29650678
UniProtQ9UYB2|SUA5_PYRAB Threonylcarbamoyl-AMP synthase (Gene Name=sua5)

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