Structure of PDB 6duq Chain D

Receptor sequence
>6duqD (length=409) Species: 656419 (Escherichia coli M718) [Search protein sequence]
MNLTELKNTPVSELITLGENMRKQDIIFAILKQHAKSGEDIFGDGVLEIL
QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE
RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLT
ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL
IDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK
DVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE
EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI
DYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT
NDDFFEMMK
3D structure
PDB6duq Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein.
ChainD
Resolution3.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP D K181 G183 K184 T185 M186 F355 K173 G175 K176 T177 M178 F347
BS02 BEF D P180 K184 R212 P172 K176 R204
BS03 ADP D R366 K367 R358 K359
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008186 ATP-dependent activity, acting on RNA
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
GO:0042802 identical protein binding
Biological Process
GO:0006353 DNA-templated transcription termination
Cellular Component
GO:0005829 cytosol
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6duq, PDBe:6duq, PDBj:6duq
PDBsum6duq
PubMed30122535
UniProtP0AG30|RHO_ECOLI Transcription termination factor Rho (Gene Name=rho)

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