Structure of PDB 6dkt Chain D

Receptor sequence
>6dktD (length=283) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]
KTISVIGMPMDLGQARRGVDMGPSAIRYAHLIERLSDMGYTVEDLGDIPI
NNLNSVLAGNEKLAQKVNKVIEEKKFPLVLGGDHSIAIGTLAGTAKHYDN
LGVIWYDAHGDLNTLETSPSGNIHGMPLAVSLGIGHESLVNLEGYAPKIK
PENVVIIGARSLDEGERKYIKESGMKVYTMHEIDRLGMTKVIEETLDYLS
ACDGVHLSLDLDGLDPNDAPGVGTPVVGGISYRESHLAMEMLYDAGIITS
AEFVEVNPILDHKNKTGKTAVELVESLLGKKLL
3D structure
PDB6dkt Structure of Arginase from Bacillus subtilis at 2.08 Angstroms resolution
ChainD
Resolution2.08 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.5.3.1: arginase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN D H97 W118 D120 D124 D223 H84 W105 D107 D111 D210
BS02 MN D D120 H122 D223 D225 D107 H109 D210 D212
Gene Ontology
Molecular Function
GO:0004053 arginase activity
GO:0016787 hydrolase activity
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0000050 urea cycle
GO:0006525 arginine metabolic process
GO:0019547 arginine catabolic process to ornithine
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:6dkt, PDBe:6dkt, PDBj:6dkt
PDBsum6dkt
PubMed
UniProtP39138|ARGI_BACSU Arginase (Gene Name=rocF)

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