Structure of PDB 6dkh Chain D

Receptor sequence
>6dkhD (length=346) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
SNAMQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYY
QEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCK
YCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEK
VMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEI
VCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPS
SVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFN
TAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
3D structure
PDB6dkh The crystal structure of L-idonate 5-dehydrogenase from Escherichia coli str. K-12 substr. MG1655
ChainD
Resolution2.608 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) C40 S42 H45 H65
Catalytic site (residue number reindexed from 1) C43 S45 H48 H68
Enzyme Commision number 1.1.1.264: L-idonate 5-dehydrogenase [NAD(P)(+)].
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN D C93 C96 C99 C107 C96 C99 C102 C110
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0050572 L-idonate 5-dehydrogenase [NAD(P)+] activity
GO:0102198 L-idonate 5-dehydrogenase (NAD+) activity
Biological Process
GO:0019521 D-gluconate metabolic process
GO:0046183 L-idonate catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:6dkh, PDBe:6dkh, PDBj:6dkh
PDBsum6dkh
PubMed
UniProtP39346|IDND_ECOLI L-idonate 5-dehydrogenase (NAD(P)(+)) (Gene Name=idnD)

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