Structure of PDB 6ddd Chain D

Receptor sequence
>6dddD (length=100) Species: 1280 (Staphylococcus aureus) [Search protein sequence]
MFAIIETGGKQIKVEEGQEIFVEKLDVNEGDTFTFDKVLFVGGDSVKVGA
PTVEGATVTATVNKQGRGKKITVFTYKRRKNSKRKKGHRQPYTKLTIDKI
3D structure
PDB6ddd cryoEM-Guided Development of Antibiotics for Drug-Resistant Bacteria.
ChainD
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D G8 G9 K10 F21 E23 K24 R67 K70 I71 K77 R78 R79 K80 N81 K83 R84 K85 K86 G87 H88 R89 Y92 G8 G9 K10 F21 E23 K24 R67 K70 I71 K77 R78 R79 K80 N81 K83 R84 K85 K86 G87 H88 R89 Y92
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ddd, PDBe:6ddd, PDBj:6ddd
PDBsum6ddd
PubMed30667174
UniProtQ2FXS8|RL21_STAA8 Large ribosomal subunit protein bL21 (Gene Name=rplU)

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