Structure of PDB 6d0o Chain D

Receptor sequence
>6d0oD (length=289) Species: 1219045 (Sphingobium herbicidovorans NBRC 16415) [Search protein sequence]
RFERIAVQPLTGVLGAEITGVDLREPLDDSTWNEILDAFHTYQVIYFPGQ
AITNEQHIAFSRRFGPVDPVPLLKSIEGYPEVQMIRREGDESGRVIGDDW
HTDSTFLDAPPAAVVMRAIDVPEHGGDTGFLSMYTAWETLSPTMQATIEG
LNVVHSATRVFGSLYQAQNRRFSNTSVKVMDVDAGDRETVHPLVVTHPGS
GRKGLYVNQVYCQRIEGMSEKESEPLLSFLFAHATKPEFTCRVRWKKDQV
VVWDNLCTMHYAINDYHGQTRILHRTTVGGVRPARHHHH
3D structure
PDB6d0o Development of enzymes for robust aryloxyphenoxypropionate and synthetic auxin herbicide tolerance traits in maize and soybean crops.
ChainD
Resolution2.3 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H111 D113 H270 R285
Catalytic site (residue number reindexed from 1) H101 D103 H260 R275
Enzyme Commision number 1.14.11.44: (R)-dichlorprop dioxygenase (2-oxoglutarate).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CO D H111 D113 H270 H101 D103 H260
BS02 AKG D I95 H111 D113 H270 R281 R285 I85 H101 D103 H260 R271 R275
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0016706 2-oxoglutarate-dependent dioxygenase activity
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0009056 catabolic process
Cellular Component
GO:0005737 cytoplasm

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Biological Process
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Cellular Component
External links
PDB RCSB:6d0o, PDBe:6d0o, PDBj:6d0o
PDBsum6d0o
PubMed30828945
UniProtQ8KSC8|RDPA_SPHHM (R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase (Gene Name=rdpA)

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