Structure of PDB 6ck7 Chain D

Receptor sequence
>6ck7D (length=172) Species: 446 (Legionella pneumophila) [Search protein sequence]
HHMAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARGVGLA
APQIGVSLRLSVIDIVGDKKEQIVIVNPEIVSSHGEKEFEEGCLSVPGAY
DTVVRAEKVTVKALDRFGKPFEITGEGLLAECLQHEIDHMNGKLFVDMLS
PLKRMMARRKLDKFKRLQARKP
3D structure
PDB6ck7 Crystal structure of a peptide deformylase from Legionella pneumophila bound to actinonin
ChainD
Resolution1.65 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C91 L92 H133 E134 H137
Catalytic site (residue number reindexed from 1) G48 Q53 C93 L94 H135 E136 H139
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BB2 D E88 Y98 E90 Y100
BS02 ZN D C91 H133 H137 C93 H135 H139
BS03 BB2 D G44 V45 G46 Q51 G90 C91 E129 C130 H133 E134 H137 G46 V47 G48 Q53 G92 C93 E131 C132 H135 E136 H139
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:6ck7, PDBe:6ck7, PDBj:6ck7
PDBsum6ck7
PubMed
UniProtQ5ZSC4

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