Structure of PDB 6cdm Chain D

Receptor sequence
>6cdmD (length=218) Species: 10090 (Mus musculus) [Search protein sequence]
QVQLQQSGAELVRPGASVTLSCKASGYTFTDYEMHWVKQTPVHGLEWIGA
IVPETGFTAYTQKFKGKAMLTADKSSSTAYMELRSLTSEDSAVYFCSRLR
LYWYFDVWGTGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY
FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYI
CNVNHKPSNTKVDKKVEP
3D structure
PDB6cdm Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.
ChainD
Resolution2.408 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D E33 A50 F56 T57 A58 L97 Y98 W99 E33 A50 F57 T58 A59 L101 Y102 W103
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