Structure of PDB 6bmf Chain D

Receptor sequence
>6bmfD (length=285) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG
NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE
KLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMN
GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN
VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAPDLT
IKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEGN
3D structure
PDB6bmf The AAA ATPase Vps4 binds ESCRT-III substrates through a repeating array of dipeptide-binding pockets.
ChainD
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D K205 W206 M207 K94 W95 M96
BS02 ADP D A136 G176 T177 G178 K179 S180 M307 G336 A25 G65 T66 G67 K68 S69 M196 G225
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:6bmf, PDBe:6bmf, PDBj:6bmf
PDBsum6bmf
PubMed29165244
UniProtP52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 (Gene Name=VPS4)

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