Structure of PDB 6bga Chain D

Receptor sequence

>6bgaD (length=245) Species: 10090 (Mus musculus) [Search protein sequence]

ADPKVIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINF
QNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWS
QDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATG
FYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSAT
FWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD

3D structure

PDB

6bga Stress-testing the relationship between T cell receptor/peptide-MHC affinity and cross-reactivity using peptide velcro.

Chain

Resolution

2.307 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	D	V54 L55 Q56 Q57 I58 E62	V55 L56 Q57 Q58 I59 E63

External links

PDB	RCSB:6bga, PDBe:6bga, PDBj:6bga
PDBsum	6bga
PubMed	30021852

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