Structure of PDB 6bcg Chain D

Receptor sequence

>6bcgD (length=287) Species: 330483 (Leptographium truncatum) [Search protein sequence]

NISPWTITGFADGESSFMLTVSKDKRNTGWSVRPRFRIGLHNKDVTILKS
IREYLGAGIITSDIDARIRFESLKELEVVINHFDKYPLITQKRADYLLFK
KAFYLIKNKEHLTEEGLNQILTLKASLNLGLSEELKEAFPNTIPAERLLV
TQEIPDSNWVAGFTAGEGSFYIRIAKNSTLKTGYQVQSVFQITQDTRDIE
LMKNLISYLNCGNIRIRTCVDLVVTNLNDIKEKIIPFFNKNHIIGVKLQD
YRDWCKVVTLIDNKEHLTSEGLEKIQKIKEGMNRGRS

3D structure

PDB

6bcg Active site residue identity regulates cleavage preference of LAGLIDADG homing endonucleases.

Chain

Resolution

2.9 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	D	E29 S31 M33 R51 R53 K108 N144 L145 E184 R190 T196 L197 K198 Q202 Q204 N230 R234 T252 L254 H293 L294	E14 S16 M18 R35 R37 K92 N128 L129 E167 R173 T179 L180 K181 Q185 Q187 N213 R217 T225 L227 H266 L267
BS02	dna	D	K41 R42 R49 R83 R85 E87 S88 L89 K125 H127 E184 S186 R190 A192 Q208 T210 D212 R234 R311	K25 R26 R33 R67 R69 E71 S72 L73 K109 H111 E167 S169 R173 A175 Q191 T193 D195 R217 R284
BS03	CA	D	E29 G183 E184	E14 G166 E167

Gene Ontology

	Molecular Function
GO:0004519	endonuclease activity

View graph for
Molecular Function

External links

PDB	RCSB:6bcg, PDBe:6bcg, PDBj:6bcg
PDBsum	6bcg
PubMed	30357419
UniProt	C7SWF3

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