Structure of PDB 6b9t Chain D

Receptor sequence
>6b9tD (length=453) Species: 436308 (Nitrosopumilus maritimus SCM1) [Search protein sequence]
KIDFKPDSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQ
KISPSLIEKAVNIWPVNERDFYIVSDDCSSGILIMTSQDSIKSSRIMERA
GKPYYEYRDTAMSKTAPFRPEWILELCKVENNDPENPKAQWNNGHFMHQF
TYFIGEVNFYYKDPEGKKHVAIMNTGDSMYITPFTPHTFTTRDGASQNGL
ILALTYGSKLTGDIQQELSSLSLDCGSQYALDFTNHENASLSLLEYYFEL
SNLTKEKFAKRTNFSMETLADFFTKKKLPTFDELKIIAKALNVNSRDLMP
NDLTESKVIVKTHDQCDHWKYPESGNYEFYELASTTALPHSKAFEIDVSS
SEDLNLDLKVGLHQYVYNIGDSALTINWNYENKTYQKSLNPGDSAYIKPF
VPHNFRGNGKILILRIGGKISGDSQRELSFVGRENTQRAISETMQWFDPK
GSN
3D structure
PDB6b9t Structural basis for methylphosphonate biosynthesis.
ChainD
Resolution2.35 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.13.11.73: methylphosphonate synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 2HE D K28 W449 K25 W446
BS02 FE D H148 Q152 H190 H145 Q149 H187
BS03 2HE D Y108 Y110 N145 H148 Q152 H190 F192 Y105 Y107 N142 H145 Q149 H187 F189
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003700 DNA-binding transcription factor activity
GO:0008198 ferrous iron binding
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0006355 regulation of DNA-templated transcription
GO:0032923 organic phosphonate biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6b9t, PDBe:6b9t, PDBj:6b9t
PDBsum6b9t
PubMed29217579
UniProtA9A1T2|MPNS_NITMS Methylphosphonate synthase (Gene Name=mpnS)

[Back to BioLiP]