Structure of PDB 6b1t Chain D

Receptor sequence
>6b1tD (length=906) Species: 28285 (Human adenovirus 5) [Search protein sequence]
MPQWSYMHISGQDASEYLSPGLVQFARATETYFSLNNKFRNPTVAPTHDV
TTDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRVLDMASTYFDIRGV
LDRGPTFKPYSGTAYNALAPKGAPNPCEWDEAQKTHVFGQAPYSGINITK
EGIQIGVEGQTPKYADKTFQPEPQIGESQWYETEINHAAGRVLKKTTPMK
PCYGSYAKPTNENGGQGILVKQLESQVEMQFFSTTEATNLTPKVVLYSED
VDIETPDTHISYMPTIKEGNSRELMGQQSMPNRPNYIAFRDNFIGLMYYN
STGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQA
VDSYDPDVRIIENHGTEDELPNYCFPLGGVINTETLTKVKPKTNGWEKDA
TEFSDKNEIRVGNNFAMEINLNANLWRNFLYSNIALYLPDKLKYSPSNVK
ISDNPNTYDYMNKRVVAPGLVDCYINLGARWSLDYMDNVNPFNHHRNAGL
RYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMVL
QSSLGNDLRVDGASIKFDSICLYATFFPMAHNTASTLEAMLRNDTNDQSF
NDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWAFTRLKTKETPSLGS
GYDPYYTYSGSIPYLDGTFYLNHTFKKVAITFDSSVSWPGNDRLLTPNEF
EIKRSVDGEGYNVAQCNMTKDWFLVQMLANYNIGYQGFYIPESYKDRMYS
FFRNFQPMSRQVVDDTKYKDYQQVGILHQHNNSGFVGYLAPTMREGQAYP
ANFPYPLIGKTAVDSITQKKFLCDRTLWRIPFSSNFMSMGALTDLGQNLL
YANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRVHRPHRGVIETVYLRT
PFSAGN
3D structure
PDB6b1t Atomic Structures of Minor Proteins VI and VII in Human Adenovirus.
ChainD
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D A20 S21 Q30 F31 R33 A34 E36 T37 Y38 N42 F45 R46 N47 T49 A14 S15 Q24 F25 R27 A28 E30 T31 Y32 N36 F39 R40 N41 T43
BS02 peptide D L372 S376 N644 Y646 S648 R676 R872 A884 E921 L332 S336 N601 Y603 S605 R633 R829 A841 E878
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075521 microtubule-dependent intracellular transport of viral material towards nucleus
Cellular Component
GO:0019028 viral capsid
GO:0039623 T=25 icosahedral viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6b1t, PDBe:6b1t, PDBj:6b1t
PDBsum6b1t
PubMed28978703
UniProtP04133|CAPSH_ADE05 Hexon protein (Gene Name=L3)

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