Structure of PDB 6az0 Chain D

Receptor sequence
>6az0D (length=439) Species: 285006 (Saccharomyces cerevisiae RM11-1a) [Search protein sequence]
KFDDVCGCDEARAELEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKT
LLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIF
IDQLDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEA
LDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARG
TPGLSGAELANLVNQAAVYACQKNAVSVDMSHFEWAKDKILMGAERKTMV
LTDAARKATAFHEAGHAIMAKYTNGATPLYKATILPRGRALGITFQLPEM
DKVDITKRECQARLDVCMGGKIAEELIYGKDNTTSGCGSDLQSATGTARA
MVTQYGMSDDVGPVNLSEEWESWSNKIRDIADNEVIELLKDSEERARRLL
TKKNVELHRLAQGLIEYETLDAHEIEQVCKGEKLAKLKT
3D structure
PDB6az0 Structure of the mitochondrial inner membrane AAA+ protease YME1 gives insight into substrate processing.
ChainD
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D Y354 Y396 Y76 Y118
BS02 ATP D D409 R438 D131 R160
BS03 ZN D H540 H544 D618 H262 H266 D340
BS04 ATP D D282 C284 P323 G324 T325 G326 K327 T328 L329 H460 G484 D4 C6 P45 G46 T47 G48 K49 T50 L51 H182 G206
Gene Ontology
Molecular Function
GO:0004176 ATP-dependent peptidase activity
GO:0004222 metalloendopeptidase activity
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:6az0, PDBe:6az0, PDBj:6az0
PDBsum6az0
PubMed29097521
UniProtB3LL85

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