Structure of PDB 5zqd Chain D

Receptor sequence
>5zqdD (length=247) Species: 169963 (Listeria monocytogenes EGD-e) [Search protein sequence]
QPNLYLSANAAAVYSVENGEALYEQNADKVMPIASLSKLMTAFLVLEAVD
NNELSWDEKLDLVRLDDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAA
ETLGDRLDGADFPKEMNNQAKKLGMSSKTTFVSASGLDVDGKSAVSTTKD
LFLLSSKLISTHPEVLETTSKPTVTTDKGAKLESTNDLLGSIQGLDGLKT
GFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGFK
3D structure
PDB5zqd Crystal Structures of Penicillin-Binding Protein D2 from Listeria monocytogenes and Structural Basis for Antibiotic Specificity
ChainD
Resolution1.888 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CEF D S58 V94 S118 T223 G224 F225 T226 R257 S35 V71 S95 T200 G201 F202 T203 R234
BS02 CEF D A203 K204 A180 K181
Gene Ontology
Molecular Function
GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:5zqd, PDBe:5zqd, PDBj:5zqd
PDBsum5zqd
PubMed30082290
UniProtQ8Y3M3

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