Structure of PDB 5ymv Chain D

Receptor sequence

>5ymvD (length=271) Species: 9031 (Gallus gallus) [Search protein sequence]

MELHTLRYIQTAMTDPGPGQPWFVTVGYVDGELFVHYNSTARRYVPRTEW
IAAKADQQYWDGQTQIGQGNEQIDRENLGILQRRYNQTGGSHTVQWMYGC
DILEGGPIRGYYQMAYDGRDFTAFDKGTMTFTAAVPEAVPTKRKWEEESE
PERWKNYLEETCVEWLRRYVEYGKAELGRRERPEVRVWGKEADGILTLSC
RAHGFYPRPIVVSWLKDGAVRGQDAHSGGIVPNGDGTYHTWVTIDAQPGD
GDKYQCRVEHASLPQPGLYSW

3D structure

PDB

5ymv An Invariant Arginine in Common with MHC Class II Allows Extension at the C-Terminal End of Peptides Bound to Chicken MHC Class I.

Chain

Resolution

2.197 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	D	Y7 Q9 Q62 I65 N69 I72 N76 I79 L80 R83 W95 Y97 Y111 M113 P139 T140 K143 W144 R152 W153 Y156 W164 Y168	Y8 Q10 Q63 I66 N70 I73 N77 I80 L81 R84 W96 Y98 Y112 M114 P140 T141 K144 W145 R153 W154 Y157 W165 Y169

External links

PDB	RCSB:5ymv, PDBe:5ymv, PDBj:5ymv
PDBsum	5ymv
PubMed	30341185
UniProt	P15979\|HA1F_CHICK Class I histocompatibility antigen, F10 alpha chain

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