Structure of PDB 5ybb Chain D

Receptor sequence
>5ybbD (length=390) Species: 273068 (Caldanaerobacter subterraneus subsp. tengcongensis MB4) [Search protein sequence]
PYKLPPGWRWVRLGEVCLPTERRDPTKNPSTYFVYVDISAIDSTVGKIVS
PKEILGQHAPSRARKVIRSGDVIFATTRPYLKNIALVPPDLDGQICSTGF
CVIRANREFAEPEFLFHLCRSDFITNQLTASKMRGTSYPAVTDNDVYNTL
IPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFP
HPGADLPPGWRWVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQGKADFGD
LHPTPRIWCSAPQKVARPGDVLISVRAPVGSTNVANLACCIGRGLAALRP
RDSLERFWLLYYLHYLEPELSKMTFNAITKKDLQNVFIPLPPLEEQRRIV
AYLDQIQQQVAALKRAQAETEAELKRLEQAILDKAFRGDL
3D structure
PDB5ybb Structural basis underlying complex assembly and conformational transition of the type I R-M system.
ChainD
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D D41 I42 S43 R66 R82 Y84 L85 D37 I38 S39 R62 R78 Y80 L81
BS02 dna D R26 K31 Y142 T146 R22 K27 Y138 T142
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004519 endonuclease activity
Biological Process
GO:0009307 DNA restriction-modification system

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Molecular Function
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Biological Process
External links
PDB RCSB:5ybb, PDBe:5ybb, PDBj:5ybb
PDBsum5ybb
PubMed28973912
UniProtQ8R9Q6

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