Structure of PDB 5yaq Chain D

Receptor sequence
>5yaqD (length=362) Species: 1197861 (Paracoccus laeviglucosivorans) [Search protein sequence]
ALGVALIGTGFMGKCHAMAWRNVATAFGGLPPRLEVLADMPADKAHSLAS
SFGFARGTADWREAVSDPAVDVVSITTPNGLHREMAEAALAAGKHVWLEK
PMALSVEDAQAMEAAARASDRRTIIGYNYTRSPAFRAAVDLIAEGAIGRP
IHFRGMYDEDYMADWSWRLTRKDGGLGALGDLGCHLVSVMVSLMGPVARV
YAQADTVITDRPHQGGTARVENEDQAQALIRFASGTSGEFSCSRVARGYR
CRLAWEVQGTEGTLRFDQERMNELWLYQPGRPEIDGFRRILTGPAQPGFA
AFCPGGGHNFGFNEQKVVEAEMLRQAIAGRGKAWPDFTDGLTIERVIHGM
ATSAQTGQPVNF
3D structure
PDB5yaq Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
ChainD
Resolution1.99 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD D G16 F17 M18 D45 T82 T83 P84 N85 L87 H88 E105 K106 N134 W177 R178 H195 G10 F11 M12 D39 T76 T77 P78 N79 L81 H82 E99 K100 N128 W167 R168 H185
BS02 ISE D K106 Y135 Y163 E165 R178 D191 H195 K100 Y129 Y157 E159 R168 D181 H185
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:5yaq, PDBe:5yaq, PDBj:5yaq
PDBsum5yaq
PubMed29799855
UniProtK7ZP76

[Back to BioLiP]