Structure of PDB 5yak Chain D

Receptor sequence
>5yakD (length=215) Species: 9606 (Homo sapiens) [Search protein sequence]
VEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVI
RTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIEEEEEINYMKRMGHRWV
TDLKKLRTNWIKEYLDTAPILILIFKQVHGFGKKVHYYNEISVSIACGIL
LAALQNAGLVTVTTAPLNCGPRLRVLLGRPAHEKLLMLLPVGYPSKEATV
PDLKRKPLDQIMVTV
3D structure
PDB5yak Redox control of iodotyrosine deiodinase
ChainD
Resolution2.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.21.1.1: iodotyrosine deiodinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FMN D R100 R101 S102 R104 L176 T237 T238 A239 R30 R31 S32 R34 L106 T163 T164 A165
BS02 YOF D E157 Y161 L173 K182 E87 Y91 L103 K112 MOAD: Kd=1.5uM
BS03 FMN D P127 S128 G129 H131 S216 P57 S58 G59 H61 S142
BS04 YOF D G129 A130 G59 A60 MOAD: Kd=1.5uM
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity

View graph for
Molecular Function
External links
PDB RCSB:5yak, PDBe:5yak, PDBj:5yak
PDBsum5yak
PubMed30052294
UniProtQ6PHW0|IYD1_HUMAN Iodotyrosine deiodinase 1 (Gene Name=IYD)

[Back to BioLiP]