Structure of PDB 5xm8 Chain D

Receptor sequence
>5xm8D (length=175) Species: 10498 (African swine fever virus BA71V) [Search protein sequence]
SMLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKMLND
VDLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTYQL
DLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTLV
PLKITTEKELIKELGFTYRIPKKRL
3D structure
PDB5xm8 Crystal structure of an RNA-cleaving DNAzyme.
ChainD
Resolution2.55 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D H115 F116 T117 G118 V120 L123 H116 F117 T118 G119 V121 L124
BS02 dna D V80 C81 G82 E83 R84 V120 I124 R127 K131 K136 L137 N138 Q139 Y140 V81 C82 G83 E84 R85 V121 I125 R128 K132 K137 L138 N139 Q140 Y141
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process
GO:0006281 DNA repair
GO:0006303 double-strand break repair via nonhomologous end joining
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0044423 virion component

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Cellular Component
External links
PDB RCSB:5xm8, PDBe:5xm8, PDBj:5xm8
PDBsum5xm8
PubMed29222499
UniProtP42494|DPOLX_ASFB7 Repair DNA polymerase X (Gene Name=Ba71V-97)

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