Structure of PDB 5xf6 Chain D

Receptor sequence
>5xf6D (length=95) Species: 8355 (Xenopus laevis) [Search protein sequence]
KTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRL
AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
3D structure
PDB5xf6 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation
ChainD
Resolution2.63 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D T29 S53 R83 S84 T85 T2 S26 R56 S57 T58
BS02 dna D K28 R30 K31 E32 S33 Y37 K1 R3 K4 E5 S6 Y10
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5xf6, PDBe:5xf6, PDBj:5xf6
PDBsum5xf6
PubMed29146919
UniProtP02281|H2B11_XENLA Histone H2B 1.1

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