Structure of PDB 5vyp Chain D

Receptor sequence
>5vypD (length=48) Species: 200320 (Nicotiana suaveolens) [Search protein sequence]
AKDCKRESNTFPGICITKPPCRKACIREKFTDGHCSKILRRCLCTKPC
3D structure
PDB5vyp Structure of the defensin NsD7 in complex with PIP2 reveals that defensin : lipid oligomer topologies are dependent on lipid type.
ChainD
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PIO D I37 R40 I38 R41
BS02 PIO D K1 K4 H33 S35 I37 L38 R40 L42 K2 K5 H34 S36 I38 L39 R41 L43
BS03 PIO D K1 K36 K2 K37
Gene Ontology
Molecular Function
GO:0008289 lipid binding
GO:0070300 phosphatidic acid binding
Biological Process
GO:0006952 defense response
GO:0031640 killing of cells of another organism
Cellular Component
GO:0005773 vacuole

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Cellular Component
External links
PDB RCSB:5vyp, PDBe:5vyp, PDBj:5vyp
PDBsum5vyp
PubMed28741756
UniProtC0HK49|DEF_NICSU Defensin NsD7

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