Structure of PDB 5vt8 Chain D

Receptor sequence
>5vt8D (length=195) Species: 10090 (Mus musculus) [Search protein sequence]
DCRPQFSKPQFSTSVYENEPAGTSVITMLATDQSQLTYSLEGPGMEAFSV
DMDSGLVTTQRPLQSYERFNLTVVATDGGEPPLWGTTMLLVEVIDVNDNR
PVFVRPPNGTILHIKEEIPLRSNVYEVYATDNDEGLNGAVRYSFLKTTGN
RDWEYFTIDPISGLIQTAQVYSLILVASDLGQPVPYETMQPLQVA
3D structure
PDB5vt8 Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness.
ChainD
Resolution2.92 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA D E2497 D2580 V2581 D2583 D2618 E17 D95 V96 D98 D133
BS02 CA D N2582 N2584 D2616 D2618 N2622 D2672 N97 N99 D131 D133 N137 D179
BS03 CA D C2482 D2512 D2562 L2568 C2 D32 D77 L83
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Biological Process
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5vt8, PDBe:5vt8, PDBj:5vt8
PDBsum5vt8
PubMed30033219
UniProtQ99PF4|CAD23_MOUSE Cadherin-23 (Gene Name=Cdh23)

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