Structure of PDB 5vo0 Chain D

Receptor sequence
>5vo0D (length=159) Species: 7955 (Danio rerio) [Search protein sequence]
QGYDVEFDPPLESKYECPICLMGLRSAVQTPCGHRFCDSCIRKSIRDTGQ
KCPVDNEVLLEEQLFPDNFAKREILSLTVKCSNFGCSEKMELRQLEKHLS
QCRFATAPCPQCQESVPMSHLDEHKSQHCLQRIMTCPDCAGSFVYAVKQS
HEQFCPFAN
3D structure
PDB5vo0 The activity of TRAF RING homo- and heterodimers is regulated by zinc finger 1.
ChainD
Resolution3.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN D C71 C74 C91 C94 C17 C20 C37 C40
BS02 ZN D C86 H88 C106 D109 C32 H34 C52 D55
BS03 ZN D C135 C140 H152 C156 C81 C86 H98 C102
BS04 ZN D C163 C166 H178 C183 C109 C112 H124 C129
BS05 ZN D C190 C193 H205 C209 C136 C139 H151 C155
Gene Ontology
Molecular Function
GO:0004842 ubiquitin-protein transferase activity
GO:0005164 tumor necrosis factor receptor binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0016567 protein ubiquitination

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Molecular Function
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Biological Process
External links
PDB RCSB:5vo0, PDBe:5vo0, PDBj:5vo0
PDBsum5vo0
PubMed29176576
UniProtQ6IWL4|TRAF6_DANRE TNF receptor-associated factor 6 (Gene Name=traf6)

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