Structure of PDB 5vnz Chain D

Receptor sequence
>5vnzD (length=111) Species: 7955 (Danio rerio) [Search protein sequence]
DQQGYDVEFDPPLESKYECPICLMGLRSAVQTPCGHRFCDSCIRKSIRDT
GQKCPVDNEVLLEEQLFPDNFAKREILSLTVKCSNFGCSEKMELRQLEKH
LSQCRFALEHH
3D structure
PDB5vnz The activity of TRAF RING homo- and heterodimers is regulated by zinc finger 1.
ChainD
Resolution3.41 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN D C71 C74 C91 C94 C19 C22 C39 C42
BS02 ZN D C86 H88 C106 D109 C34 H36 C54 D57
BS03 ZN D C135 C140 H152 C156 C83 C88 H100 C104
Gene Ontology
Molecular Function
GO:0004842 ubiquitin-protein transferase activity
GO:0005164 tumor necrosis factor receptor binding
GO:0046872 metal ion binding
Biological Process
GO:0016567 protein ubiquitination

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5vnz, PDBe:5vnz, PDBj:5vnz
PDBsum5vnz
PubMed29176576
UniProtQ6IWL4|TRAF6_DANRE TNF receptor-associated factor 6 (Gene Name=traf6)

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