Structure of PDB 5vf4 Chain D

Receptor sequence

>5vf4D (length=378) Species: 498848 (Thermus aquaticus Y51MC23) [Search protein sequence]

IFSVKDSLRQAVEAASGGLCTVMYTKKGQPVFLRRIPRFNLEDIDPSLGT
GPHPAFVVGGEVKSEIWIGQFPGIVSNGELISVPGVDPANTINFDEALGY
ARASGPGFHLMTNAEWAAVALLTWKSRGAGDDPVRGNTQWGRSHEAQWEA
GTRQSGDAPGEDTGAQGRSGRTLTGSGPATWRHDGTPAGIADLVGNVWEW
VAGLRLVGGEIQIIPDNDAAFASTDMSASSPLWKAIRASDGALVSPGTSG
TLKYDINPNKSYSNDNTIQDLLTLHTTTQTPPAGWDSNTYQDYASALYKD
LVVGTGITVPNLLKVLMLAPHTTSITKGRLYARPYGERLPIRGGDWGNGG
VAGLAALYLLNPRGSRRWGVGARPAFVL

3D structure

PDB

5vf4 Crystal structure of a Thermus aquaticus diversity-generating retroelement variable protein.

Chain

Resolution

2.81 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CA	D	D193 L194 G196 V198 E200	D192 L193 G195 V197 E199

External links

PDB	RCSB:5vf4, PDBe:5vf4, PDBj:5vf4
PDBsum	5vf4
PubMed	30629599

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