Structure of PDB 5uw6 Chain D

Receptor sequence
>5uw6D (length=697) Species: 39387 (Gypsophila vaccaria) [Search protein sequence]
SGFSKPLHYPPVRRDETVVDDYFGVKVADPYRWLEDPNSEETKEFVDNQE
KLANSVLEECELIDKFKQKIIDFVNFPRCGVPFRRANKYFHFYNSGLQAQ
NVFQMQDDLDGKPEVLYDPNLREGGRSGLSLYSVSEDAKYFAFGIHSGLT
EWVTIKILKTEDRSYLPDTLEWVKFSPAIWTHDNKGFFYCPYPNQEARYH
FLGTDQSEDILLWRDLENPAHHLKCQITDDGKYFLLYILDGCDDANKVYC
LDLTKLPNGLAPFMKLIDSFDASYTAIANDGSVFTFQTNKDAPRKKLVRV
DLNNPSVWTDLVPESKKDLLESAHAVNENQLILRYLSDVKHVLEIRDLES
GALQHRLPIDIGSVDGITARRRDSVVFFKFTSILTPGIVYQCDLKNDPTQ
LKIFRESVVPDFDRSEFEVKQVFVPSKDGTKIPIFIAARKGISLDGSHPC
EMHGYGGFGINMMPTFSASRIVFLKHLGGVFCLANIRGGGEYGEEWHKAG
FRDKKQNVFDDFISAAEYLISSGYTKARRVAIEGGSNGGLLVAACINQRP
DLFGCAEANCGVMDMLRFHKFTLGYLWTGDYGCSDKEEEFKWLIKYSPIH
NVRRPWEQPGNEETQYPATMILTADHDDRVVPLHSFKLLATMQHVLCTSL
EDSPQKNPIIARIQRKAAHYGRATMTQIAEVADRYGFMAKALEAPWI
3D structure
PDB5uw6 Characterization of the macrocyclase involved in the biosynthesis of RiPP cyclic peptides in plants.
ChainD
Resolution3.3 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H695
Catalytic site (residue number reindexed from 1) H669
Enzyme Commision number 3.4.21.-
3.4.21.26: prolyl oligopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D R81 F95 A102 N104 F492 S493 A494 S495 T700 R78 F92 A99 N101 F466 S467 A468 S469 T674
BS02 ZPR D F178 H239 Y481 F484 S562 W603 R655 F175 H222 Y455 F458 S536 W577 R629
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
GO:0008236 serine-type peptidase activity
GO:0046872 metal ion binding
GO:0070012 oligopeptidase activity
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5uw6, PDBe:5uw6, PDBj:5uw6
PDBsum5uw6
PubMed28584123
UniProtR4P353

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