Structure of PDB 5ud6 Chain D

Receptor sequence
>5ud6D (length=299) Species: 280699 (Cyanidioschyzon merolae strain 10D) [Search protein sequence]
KHFFGRVITALVTPFKLTGVEVDYGVAESLAAHLAENGSDAIIVAGTTGE
SATLTWSEEYELFRVVKSAVAGTKCRVIAGAGSNSTEEAIEATKKSAKLG
LDGTLQVVPYYNKPPQQGIMAHFRAIANAAPDLPMMLYNIPGRTGINMTA
ETSIKLAEMCPNIVALKEASGNLEQFARIRRATSPDFALYSGDDALTLPL
LSLGGNGVVSVASHFIGPEIQRMIEHFVDLGNPEEAFRIHCRYMDLFEAL
FVMANPIPAKAALRLLGWPVGPTRLPLTDITASAEQQLRQAMIAAGLLS
3D structure
PDB5ud6 Crystal structure of DHDPS from Cyanidioschyzon merolae with lysine bound
ChainD
Resolution2.4 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) T54 Y118 Y145 R150 K174 V216
Catalytic site (residue number reindexed from 1) T47 Y111 Y138 R143 K167 V209
Enzyme Commision number 4.3.3.7: 4-hydroxy-tetrahydrodipicolinate synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 LYS D N91 E95 N84 E88
BS02 CA D A52 S58 E66 G87 A45 S51 E59 G80
BS03 LYS D A59 L61 W63 E66 Y117 A52 L54 W56 E59 Y110
Gene Ontology
Molecular Function
GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity
GO:0016829 lyase activity
Biological Process
GO:0009089 lysine biosynthetic process via diaminopimelate

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Molecular Function
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Biological Process
External links
PDB RCSB:5ud6, PDBe:5ud6, PDBj:5ud6
PDBsum5ud6
PubMed
UniProtM1V4H9

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