Structure of PDB 5okd Chain D

Receptor sequence
>5okdD (length=239) Species: 9913 (Bos taurus) [Search protein sequence]
DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHL
VGVCYTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAA
RAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNP
YFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHR
KRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPP
3D structure
PDB5okd X-ray and cryo-EM structures of inhibitor-bound cytochromebc1complexes for structure-based drug discovery.
ChainD
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 7.1.1.8: quinol--cytochrome-c reductase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HEC D C37 C40 H41 N105 P111 R120 Y126 L131 F153 I158 G159 M160 P163 C36 C39 H40 N104 P110 R119 Y125 L130 F152 I157 G158 M159 P162
Gene Ontology
Molecular Function
GO:0008121 ubiquinol-cytochrome-c reductase activity
GO:0009055 electron transfer activity
GO:0020037 heme binding
GO:0046872 metal ion binding
Biological Process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0045275 respiratory chain complex III

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Cellular Component
External links
PDB RCSB:5okd, PDBe:5okd, PDBj:5okd
PDBsum5okd
PubMed29765610
UniProtP00125|CY1_BOVIN Cytochrome c1, heme protein, mitochondrial (Gene Name=CYC1)

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