Structure of PDB 5oes Chain D

Receptor sequence
>5oesD (length=446) Species: 4113 (Solanum tuberosum) [Search protein sequence]
VDPHDIDPKLVQKLANDALVWCSLRGLLVGDRNSERSGTVPGVDMVHAPV
ALIPMSFPESHWKQACEVAPIFNELVDRVSQDGEFLQQSLSRTRKVDPFT
SRLLEIHSKMLEINKIEEIRLGLHRSDYMLDEQTKLLLQIELNTISSSFP
GLSCLVSELHRSLLQQYREDIASDPNRIPANNAVNQFAEALAKAWNEYGD
PRAVIMFAVQAEERNMYDQHWLSASLRERHQVTTIRKTLAEIDALGELQQ
DGTLVVDGQAVAVIYFRAGYAPSDYNSESEWKARLLMEQSRAVKCPSISY
HLAGSKKIQQELAKPNVLERFLENKDDIAKLRKCFAGLWSLDESDIVKDA
IDRPELYVMKPQNNIYGEDVRDALLKLYILMQRIFPKISHSILMREGISH
KEQTISELGIYGTYLRNKTEVVINQQAGYLMRTKVSFAVLDSIYLV
3D structure
PDB5oes Effector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene.
ChainD
Resolution2.48 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 6.3.2.3: glutathione synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP D M141 E153 V370 K372 Y383 R410 I411 E434 K461 M129 E141 V358 K360 Y366 R383 I384 E407 K434
BS02 3GC D R137 I157 S158 S160 E225 Q231 R279 Y282 R125 I145 S146 S148 E213 Q219 R267 Y270
BS03 MG D D139 E153 D127 E141
BS04 MG D L154 G316 L142 G304
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004363 glutathione synthase activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0043295 glutathione binding
GO:0046872 metal ion binding
Biological Process
GO:0006750 glutathione biosynthetic process
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5oes, PDBe:5oes, PDBj:5oes
PDBsum5oes
PubMed29641602
UniProtM1CSC4

[Back to BioLiP]