Structure of PDB 5odi Chain D

Receptor sequence
>5odiD (length=137) Species: 523845 (Methanothermococcus thermolithotrophicus DSM 2095) [Search protein sequence]
WEPKIIGFCCNWCTYGGADTAGVGRMQYPPSIRIIRVMCSGRIEPSLILK
AFKEGADGVFVGGCHLGDCHYDSGNYKWQRRVMMLYELLEELGIEKERLN
HEWISASEGEKFQNTMKDFYNKIEALGPCKLKEELDK
3D structure
PDB5odi Methanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction.
ChainD
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.8.98.1: dihydromethanophenazine:CoB--CoM heterodisulfide reductase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FES D C13 C42 S43 C67 C72 H73 C10 C39 S40 C64 C69 H70
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
GO:0051537 2 iron, 2 sulfur cluster binding
GO:0051912 CoB--CoM heterodisulfide reductase activity

View graph for
Molecular Function
External links
PDB RCSB:5odi, PDBe:5odi, PDBj:5odi
PDBsum5odi
PubMed28818947
UniProtA0A2D0TC98

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