Structure of PDB 5o96 Chain D

Receptor sequence
>5o96D (length=243) Species: 446 (Legionella pneumophila) [Search protein sequence]
AVRTIRIYQPGEYQPGQLLELSPEAGQHVGVVLRMEQGEQLTLFNGDNKE
FTASIERVKKKQVFVRIASVLEVNRESPLKIHLAQAISKGERMEMVMQKS
AELGVACITPLITERCQVKIDKEKMAKKMHQWLNIIIGACEQCGRNQIPE
LRQPVYLDQFVREAKEHLKLILHPAFSKTWRDYPVQPPDVALIIGPEGGF
SDEEIRLTSGHGFLPLSLGPRVLRTETAAITALSVLQAAGGDL
3D structure
PDB5o96 Crystal structure of the Legionella pneumophila Lpg2936 in complex with the cofactor S-adenosyl-L-methionine reveals novel insights into the mechanism of RsmE family methyltransferases.
ChainD
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.1.1.193: 16S rRNA (uracil(1498)-N(3))-methyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SAM D L173 H174 G196 E198 G199 G200 S218 L224 A229 L172 H173 G195 E197 G198 G199 S217 L223 A228 MOAD: Ka=708000M^-1
Gene Ontology
Molecular Function
GO:0008168 methyltransferase activity
GO:0070042 rRNA (uridine-N3-)-methyltransferase activity
Biological Process
GO:0006364 rRNA processing
GO:0032259 methylation
GO:0070475 rRNA base methylation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5o96, PDBe:5o96, PDBj:5o96
PDBsum5o96
PubMed28940762
UniProtQ5ZRE6

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