Structure of PDB 5o6u Chain D

Receptor sequence

>5o6uD (length=315) Species: 319224 (Shewanella putrefaciens CN-32) [Search protein sequence]

MQKVTGIKSVDFKIKALGHGVVNWNGPTTLTGDDGKTVDNHTLPKLRGYT
NLTGKVKDETGYKYKKQATDINFKETPLYISQNCIRHHLFREQAFDLHYA
SDKNLKNVLASITGLIRGYVVPSSQCKRTSPLLLEDFVDQLGNGNFEQYG
QAGARDSTSFFSKTTFGDTEYISYGSISIEQLQFISLDKKFDRAAMVIKE
GEGEVIAAELQNYIQSLNPSLNPQAIFHSNYVRRGTIFEEGECGILLNDD
AVKALVAETLERLANLSIRQAKGYMYVDDITVDYNDSHKMMRIKRDESEI
INEQHAPFAQYFYAK

3D structure

PDB

5o6u Structural Variation of Type I-F CRISPR RNA Guided DNA Surveillance.

Chain

Resolution

3.25 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	N23 W24 K45 S81 N83 C84 R86 H87 R117 G118 Y119 V120 K127 R128 T129 S130 Q148 Y149 G150 Q151 A152 F160 F161 Q270 A271 K272	N23 W24 K45 S81 N83 C84 R86 H87 R117 G118 Y119 V120 K127 R128 T129 S130 Q148 Y149 G150 Q151 A152 F160 F161 Q270 A271 K272
BS02	dna	D	D39 N40 P122 Q125 S157 S159 F160 F161	D39 N40 P122 Q125 S157 S159 F160 F161

External links

PDB	RCSB:5o6u, PDBe:5o6u, PDBj:5o6u
PDBsum	5o6u
PubMed	28781236
UniProt	A4Y6G1

[Back to BioLiP]