Structure of PDB 5njt Chain D

Receptor sequence
>5njtD (length=199) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]
ARYTGPSWKLSRRLGISLSGTGKELEKRPYAPGPHGPGQRKKLSEYGLQL
QEKQKLRHMYGVNERQFRTLFDKAGKLAGKHGENFMILLDSRLDNVVYKL
GLARTRRQARQLVNHGHILVDGSRVDIPSYLVKPGQTIGVREKSRNLSII
KESVEVNNFVPEYLTFDAEKLEGTFTRLPERSELAPEINEALIVEFYSR
3D structure
PDB5njt Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
ChainD
Resolution3.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D A2 P7 S8 W9 G34 P35 N64 E65 D127 E196 S199 R200 A1 P6 S7 W8 G33 P34 N63 E64 D126 E195 S198 R199
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
GO:0042274 ribosomal small subunit biogenesis
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5njt, PDBe:5njt, PDBj:5njt
PDBsum5njt
PubMed28468753
UniProtP21466|RS4_BACSU Small ribosomal subunit protein uS4 (Gene Name=rpsD)

[Back to BioLiP]