Structure of PDB 5ncc Chain D

Receptor sequence
>5nccD (length=578) Species: 554065 (Chlorella variabilis) [Search protein sequence]
SASAVEDIRKVLSDSSSPVAGQKYDYILVGGGTAACVLANRLSADGSKRV
LVLEAGPDNTSRDVKIPAAITRLFRSPLDWNLFSELQEQLAERQIYMARG
RLLGGSSATNATLYHRGAAGDYDAWGVEGWSSEDVLSWFVQAETNADFGP
GAYHGSGGPMRVENPRYTNKQLHTAFFKAAEEVGLTPNSDFNDWSHDHAG
YGTFQVMQDKGTRADMYRQYLKPVLGRRNLQVLTGAAVTKVNIDGKAQAL
GVEFSTDGPTGERLSAELAPGGEVIMCAGAVHTPFLLKHSGVGPSAELKE
FGIPVVSNLAGVGQNLQDQPACLTAAPVKEKYDGIAISDHIGQIRKRAIA
SYLLGGRGGLTSTGCDRGAFVRTAGQALPDLQVRFVPGMALDPDGVSTYV
RFAKFQSQGLKWPSGITMQLIACRPQSTGSVGLKSADPFAPPKLSPGYLT
DKDGADLATLRKGIHWARDVARSSALSEYLDGELFPGSGVVSDDQIDEYI
RRSIHSSNAITGTCKMGNAGDSSSVVDNQLRVHGVEGLRVVDASVVPKIP
GGQTGAPVVMIAERAAALLTGKATIGAS
3D structure
PDB5ncc An algal photoenzyme converts fatty acids to hydrocarbons.
ChainD
Resolution3.12 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) R414 L487 I488 S574 A576 G619 Q620
Catalytic site (residue number reindexed from 1) R347 L420 I421 S507 A509 G552 Q553
Enzyme Commision number 4.1.1.106: fatty acid photodecarboxylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD D G90 G92 T93 L113 E114 F134 W140 A158 R159 G165 S166 N170 A171 T172 L173 V298 A341 H345 L349 N575 A610 Q620 T621 G622 V625 G30 G32 T33 L53 E54 F74 W80 A98 R99 G105 S106 N110 A111 T112 L113 V238 A278 H282 L286 N508 A543 Q553 T554 G555 V558
Gene Ontology
Molecular Function
GO:0008812 choline dehydrogenase activity
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
GO:0016829 lyase activity
GO:0050660 flavin adenine dinucleotide binding
Biological Process
GO:0019285 glycine betaine biosynthetic process from choline
Cellular Component
GO:0009507 chloroplast
GO:0016020 membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:5ncc, PDBe:5ncc, PDBj:5ncc
PDBsum5ncc
PubMed28860382
UniProtA0A248QE08|FAP_CHLVA Fatty acid photodecarboxylase, chloroplastic (Gene Name=FAP)

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