Structure of PDB 5nbl Chain D

Receptor sequence
>5nblD (length=366) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
DSEVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHGQKDSYVGDEA
QSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA
PMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDG
VTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSERGYSFSTTAEREI
VRDIKEKLCYVALDFEQEMQTAAQSSSIEKSYELPDGQVITIGNERFRAP
EALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPG
IAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLTTFQQMWIS
KQEYDESGPSIVHHKC
3D structure
PDB5nbl The nuclear actin-containing Arp8 module is a linker DNA sensor driving INO80 chromatin remodeling.
ChainD
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D G146 T351 G138 T343
Gene Ontology
Molecular Function
GO:0005200 structural constituent of cytoskeleton
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
GO:0042802 identical protein binding
Biological Process
GO:0000011 vacuole inheritance
GO:0006281 DNA repair
GO:0006338 chromatin remodeling
GO:0006351 DNA-templated transcription
GO:0006355 regulation of DNA-templated transcription
GO:0006897 endocytosis
GO:0009306 protein secretion
GO:0030010 establishment of cell polarity
GO:0030476 ascospore wall assembly
GO:1902404 mitotic actomyosin contractile ring contraction
Cellular Component
GO:0000142 cellular bud neck contractile ring
GO:0000785 chromatin
GO:0000812 Swr1 complex
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005884 actin filament
GO:0030479 actin cortical patch
GO:0031011 Ino80 complex
GO:0032432 actin filament bundle
GO:0035267 NuA4 histone acetyltransferase complex
GO:0043232 intracellular non-membrane-bounded organelle

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5nbl, PDBe:5nbl, PDBj:5nbl
PDBsum5nbl
PubMed30177756
UniProtP60010|ACT_YEAST Actin (Gene Name=ACT1)

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