Structure of PDB 5m0j Chain D

Receptor sequence
>5m0jD (length=232) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
DIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERTTL
IKFVKKLRFYNDSVLSYNASEFINEGKNELDPEADSFDKVILPIASMFVK
SVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFS
QWMIESLRIGSNLLDLEVVQFAIKSADEDETDNIFLQEILPVNSEEEFQT
LSAAWHSILDGKLSALDEEFDVVATKWHDKFG
3D structure
PDB5m0j Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex.
ChainD
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D Y115 Q119 D145 E172 F176 I194 Q197 E198 I199 L200 W215 Y110 Q114 D140 E167 F171 I184 Q187 E188 I189 L190 W205
BS02 peptide D I56 K57 K60 I51 K52 K55
BS03 rna D R43 R52 I56 K60 R63 R38 R47 I51 K55 R58
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0008289 lipid binding
GO:1990825 sequence-specific mRNA binding
Biological Process
GO:0007533 mating type switching
GO:0008298 intracellular mRNA localization
GO:0051028 mRNA transport
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005934 cellular bud tip

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5m0j, PDBe:5m0j, PDBj:5m0j
PDBsum5m0j
PubMed28092367
UniProtP36068|SHE2_YEAST SWI5-dependent HO expression protein 2 (Gene Name=SHE2);
P38272|SHE3_YEAST SWI5-dependent HO expression protein 3 (Gene Name=SHE3)

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