Structure of PDB 5kyo Chain D

Receptor sequence
>5kyoD (length=384) Species: 13690 (Sphingobium yanoikuyae) [Search protein sequence]
ERPDNVPADRVFDFDIYRDVPGLDFHQSWREIMRPHPLMWTPHNGGHWVA
LRSDLAETVMSDFERFSNHTVLVPKETAGEAYRLIPLSLDPPEHRPFRSL
LNENLGPKPLRPIEQVVTDLAVSLIEGFRPKGRCNFTHEFAEQLPVRIFM
RIVDLPVEDLPKLKHLADQYTRPDPLDDVTKQFREYLRPVIEARRIKPGE
DMISRMINLTDIEAENICIQVLVGGLDTVVNMLGFTFSHLAKDHALRRAI
AADPSLIDDALLEFFRRFPVVSSAREVLRDQEFEGVLLKAGDMVMAPTVV
VAMDDARNEDPLEFRLGRKARQHSTFGKGSHTCPGAHLARMEMKVVLREW
FARIPEFRIEDDAPLRYSNGIVGSVKPFVLEWPV
3D structure
PDB5kyo X-ray crystal structure of cytochrome P450 monooxygenase CYP101J2 from Sphingobium yanoikuyae strain B2.
ChainD
Resolution1.8 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) R188 G250 D253 T254 V255 C359 P360 G361 E368 V398
Catalytic site (residue number reindexed from 1) R172 G224 D227 T228 V229 C333 P334 G335 E342 V372
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HEM D L103 H110 L117 G250 G251 T254 S299 R301 T351 F352 H357 C359 P360 G361 L364 L87 H94 L101 G224 G225 T228 S273 R275 T325 F326 H331 C333 P334 G335 L338
Gene Ontology
Molecular Function
GO:0004497 monooxygenase activity
GO:0005506 iron ion binding
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 heme binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5kyo, PDBe:5kyo, PDBj:5kyo
PDBsum5kyo
PubMed27936485
UniProtA0A1C9CIU0

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