Structure of PDB 5ksb Chain D

Receptor sequence
>5ksbD (length=178) Species: 4565,9606 [Search protein sequence]
DSPEDFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVT
PLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTI
SPLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVML
EMTPQRGDVYTCHVEHPSLQNPIIVEWR
3D structure
PDB5ksb Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution.
ChainD
Resolution2.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D F11 Y30 Y37 A57 W61 R70 E74 T77 V78 N82 L85 F10 Y29 Y36 A56 W60 R69 E73 T76 V77 N81 L84
Gene Ontology
Biological Process
GO:0006955 immune response
GO:0019882 antigen processing and presentation
Cellular Component
GO:0016020 membrane
GO:0042613 MHC class II protein complex

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5ksb, PDBe:5ksb, PDBj:5ksb
PDBsum5ksb
PubMed27568928
UniProtA0A0U5Q247;
P08079

[Back to BioLiP]