Structure of PDB 5koz Chain D

Receptor sequence
>5kozD (length=456) Species: 1076 (Rhodopseudomonas palustris) [Search protein sequence]
MDQSNRYANLNLKESELIAGGRHVLCAYIMKPKAGFGNFIQTAAHFAAES
STGTNVEVSTTDDFTRGVDALVYEVDEANSLMKIAYPIELFDRNVIDGRA
MIASFLTLTIGNNQGMGDVEYAKMYDFYVPPAYLKLFDGPSTTIKDLWRV
LGRPVINGGFIVGTIIKPKLGLRPQPFANACYDFWLGGDFICNDEPQGNQ
VFAPFKDTVRAVADAMRRAQDKTGEAKLFSFNITADDHYEMLARGEFILE
TFADNADHIAFLVDGYVAGPAAVTTARRAFPKQYLHYHRAGHGAVTSPQS
KRGYTAFVLSKMARLQGASGIHTGTMGFGKMEGEAADRAIAYMITEDAAD
GPYFHQEWLGMNPTTPIISGGMNALRMPGFFDNLGHSNLIMTAGGGAFGH
VDGGAAGAKSLRQAEQCWKQGADPVEFAKDHREFARAFESFPQDADKLYP
NWRAKL
3D structure
PDB5koz Structure function studies of R. palustris RubisCO.
ChainD
Resolution2.3 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) L25 K167 C192 N193 D194 E195 H288 H322 K330
Catalytic site (residue number reindexed from 1) L25 K167 C192 N193 D194 E195 H288 H322 K330
Enzyme Commision number 4.1.1.39: ribulose-bisphosphate carboxylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CAP D T54 N112 T54 N112
BS02 CAP D I165 K167 D194 E195 H288 R289 H322 K330 M331 S369 G370 G371 G394 I165 K167 D194 E195 H288 R289 H322 K330 M331 S369 G370 G371 G394
BS03 MG D D194 E195 D194 E195
BS04 CO3 D I165 N193 D194 E195 H288 I165 N193 D194 E195 H288
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004497 monooxygenase activity
GO:0016829 lyase activity
GO:0016984 ribulose-bisphosphate carboxylase activity
GO:0046872 metal ion binding
Biological Process
GO:0015977 carbon fixation
GO:0015979 photosynthesis
GO:0019253 reductive pentose-phosphate cycle

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Molecular Function
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Biological Process
External links
PDB RCSB:5koz, PDBe:5koz, PDBj:5koz
PDBsum5koz
PubMed
UniProtQ6N0W9|RBL2_RHOPA Ribulose bisphosphate carboxylase (Gene Name=cbbM)

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