Structure of PDB 5kod Chain D

Receptor sequence
>5kodD (length=566) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
TLDQKNKQKLQLIEELTSNADQVQRQVLEEILTRNADVEYLRRHDLNGRT
DRETFKNIMPVITYEDIEPEINRIANGDKSPILSSKPISEFLTSSGTSGG
ERKLMPTIEEELDRRSLLYSLLMPVMSQFVPGLENGKGMYFLFIKSESKT
PGGLPARPVLTSYYKSSHFKERPYDPYTNYTSPNETILCSDSYQSMYSQM
LCGLCQHQEVLRVGAVFASGFIRAIKFLEKHWIELVRDIRTGTLSSLITD
PSVREAVAKILKPSPKLADFVEFECKKSSWQGIITRLWPNTKYVDVIVTG
TMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPS
MAYFEFLPVHQELVDLVDVKLGQEYELVVTTYAGLCRYRVGDLLRVTGFK
NKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYT
SYADTSSIPGHYVLFWELCPIPPSVFEDCCLAVEESFNTVYRQGRVSDKS
IGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRV
VDSYFSPKCPKWVPGH
3D structure
PDB5kod Arabidopsis thaliana GH3.5 acyl acid amido synthetase mediates metabolic crosstalk in auxin and salicylic acid homeostasis.
ChainD
Resolution2.202 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.3.2.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP D S110 I312 T314 Y338 A339 S340 S341 Y360 D427 F443 R446 S95 I297 T299 Y323 A324 S325 S326 Y345 D392 F408 R411
BS02 IAC D K160 P173 L175 F232 A339 K145 P158 L160 F217 A324
Gene Ontology
Molecular Function
GO:0010279 indole-3-acetic acid amido synthetase activity
GO:0016874 ligase activity
Biological Process
GO:0009733 response to auxin
GO:0010120 camalexin biosynthetic process
GO:1901183 positive regulation of camalexin biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5kod, PDBe:5kod, PDBj:5kod
PDBsum5kod
PubMed27849615
UniProtO81829|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 (Gene Name=GH3.5)

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