Structure of PDB 5jy1 Chain D

Receptor sequence
>5jy1D (length=266) Species: 266265 (Paraburkholderia xenovorans LB400) [Search protein sequence]
MGLLEQRVALVTGAGGGIGRGVARSFGNEGAAVIIAEINESTGRQVEQEI
REMGGRSLFVKTDVTSKASIEAAVRSAVEQFGSLDILVNNAFVPTPNVLL
EEKTDEMLEQTLTTSLWATWWAMRAAFVPMRERRWGRIVNFYSIDTETGA
WLHGDYNTAKAGIVGLTRSAASEWGRFNITVNAIAPTAMGATFFELAAKN
PEFAERSAAARPLGRSGDPEQDIGPAAVFFASEMSRFVTGETLHVDGGLH
LPGYNSRPAGIKPREY
3D structure
PDB5jy1 Crystal Structure of putative short-chain dehydrogenase/reductase from Burkholderia xenovorans LB400 bound to NAD
ChainD
Resolution1.65 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G17 S143 H153 Y156 K160 P201
Catalytic site (residue number reindexed from 1) G17 S143 H153 Y156 K160 P201
Enzyme Commision number 1.1.1.100: 3-oxoacyl-[acyl-carrier-protein] reductase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD D G13 G17 I18 E37 I38 T62 D63 V64 N90 F92 V93 S143 Y156 K160 P186 T187 A188 A191 G13 G17 I18 E37 I38 T62 D63 V64 N90 F92 V93 S143 Y156 K160 P186 T187 A188 A191
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0016491 oxidoreductase activity
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

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Molecular Function
External links
PDB RCSB:5jy1, PDBe:5jy1, PDBj:5jy1
PDBsum5jy1
PubMed
UniProtQ13HF0

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