Structure of PDB 5jop Chain D

Receptor sequence

>5jopD (length=218) Species: 10090 (Mus musculus) [Search protein sequence]

DVLLTQTPLSLPVNLGDQASISCRSSQTILHSDGYTYLEWYLQRPGQSPK
LLIYRVYKRFSGIPDRFRGSGSGMDFTLTISGVEAEDLGIYYCFQGSYVP
RTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN
VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCE
ATHKTSTSPIVKSFNRNE

3D structure

PDB

5jop T cells control the generation of nanomolar-affinity anti-glycan antibodies.

Chain

Resolution

1.75 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	BGC	D	Y49 R50	Y54 R55
BS02	GAL	D	Y30 Y49 R50 K53	Y35 Y54 R55 K58
BS03	GAL	D	Y32 E34 G91 R96	Y37 E39 G96 R101

External links

PDB	RCSB:5jop, PDBe:5jop, PDBj:5jop
PDBsum	5jop
PubMed	28287405

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