Structure of PDB 5jnb Chain D

Receptor sequence
>5jnbD (length=263) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]
LSEKIWDYHNKVSQTDEMLQRKLHLRDMLYTAISPVFPLSGLYVVGSSLN
GFGNNSSDMDLCLMITNKDLDQKNDAVVVLNLILSTLQYEKFVESQKLIL
AKVPILRINFAAPFDDITVALNANNSVAIRNTHLLCYYSSYDWRVRPLVS
VVKEWAKRTSYSLVLMVIHFLQCGPTKVLPNLQQSYPNRFSNKVDVRTLN
VTMALEETLGELLIGFLDYYANEFNYDRDAISIRQGRRVERVCIEEPFTF
EAIKKAFREAHGE
3D structure
PDB5jnb Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity.
ChainD
Resolution2.486 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.19: polynucleotide adenylyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D L571 R574 F585 L587 G589 L590 Y591 V592 L597 M612 I613 T614 N615 I677 T680 C684 Y685 S688 R694 R756 V760 L23 R26 F37 L39 G41 L42 Y43 V44 L49 M64 I65 T66 N67 I129 T132 C136 Y137 S140 R146 R197 V201
External links
PDB RCSB:5jnb, PDBe:5jnb, PDBj:5jnb
PDBsum5jnb
PubMed27288313
UniProtO17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 (Gene Name=gld-2)

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