Structure of PDB 5jdc Chain D

Receptor sequence
>5jdcD (length=248) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence]
EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKE
RSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTP
LVKTVETQVAELIGTNAIAPFLLTMSFAQRQSNLSIVNLCDAMVDQPCMA
FSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDK
WRRKVPLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLSLVHA
3D structure
PDB5jdc Profiling of Flavonol Derivatives for the Development of Antitrypanosomatidic Drugs.
ChainD
Resolution1.78 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) R14 D161 Y174 K178
Catalytic site (residue number reindexed from 1) R13 D141 Y154 K158
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAP D R14 I15 Y34 H35 N36 S37 L63 N93 A94 S95 T126 L159 K178 P204 G205 S207 L208 R13 I14 Y33 H34 N35 S36 L62 N92 A93 S94 T115 L139 K158 P184 G185 S187 L188
BS02 6JP D F97 D161 M163 C168 P210 W221 F96 D141 M143 C148 P190 W201 MOAD: ic50=104.2uM
PDBbind-CN: -logKd/Ki=3.98,IC50=104.2uM
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0047040 pteridine reductase activity

View graph for
Molecular Function
External links
PDB RCSB:5jdc, PDBe:5jdc, PDBj:5jdc
PDBsum5jdc
PubMed27411733
UniProtO76290

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