Structure of PDB 5ify Chain D

Receptor sequence
>5ifyD (length=293) Species: 269482 (Burkholderia vietnamiensis G4) [Search protein sequence]
ARKGIILAGGSGTRLYPITHAVSKQLLPVYDKPMIYYPLSTLMIAGIRDV
LIISTPQDTPRFESMLGDGSQWGMNIQYATQPSPDGLAQAFVIGRDFVGN
EPSALILGDNIFYGHDLAKQLERASAKDTGATVFAYHVQDPERYGVVEFD
REFRAISIEEKPAKPRSSYAVTGLYFYDRQVCDIAADIKPSARGELEITD
VNSRYLAAGQLDVELMGRGYAWLDTGTHDSLIEAGTFIATLQKRQGLMVA
CPEEIAYRRNWIDAEQVLKLAQPLAKNAYGQYLRNLLTHQVAW
3D structure
PDB5ify Crystal structure of Glucose-1-phosphate thymidylyltransferase from Burkholderia vietnamiensis in complex with 2'-Deoxyuridine-5'-monophosphate and 2'-Deoxy-Thymidine-B-L-Rhamnose
ChainD
Resolution2.25 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.24: glucose-1-phosphate thymidylyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 UMP D G218 R219 G220 G217 R218 G219
BS02 TRH D L8 G10 Q82 P85 G87 L88 L108 D110 Y145 G146 E161 K162 V172 T173 G174 Y176 L7 G9 Q81 P84 G86 L87 L107 D109 Y144 G145 E160 K161 V171 T172 G173 Y175
BS03 UMP D I45 Y114 G115 H116 D117 E255 I256 I44 Y113 G114 H115 D116 E254 I255
Gene Ontology
Molecular Function
GO:0008879 glucose-1-phosphate thymidylyltransferase activity
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0009058 biosynthetic process
GO:0045226 extracellular polysaccharide biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5ify, PDBe:5ify, PDBj:5ify
PDBsum5ify
PubMed
UniProtA4JC15

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